NEXT GENERATION SEQUENCING WORKSHOP TALKS AVAILABLE NEXT GENERATION SEQUENCING WORKSHOP TALKS AVAILABLE

22nd May 2012

TGAC hosted a workshop at the JIC on 17th April 2012 to outline the Next Generation Sequencing platforms and pipelines at The Genome Analysis Centre (TGAC) and how they can further Arabidopsis research.

Programme

Welcome and introduction to TGAC - Mario Caccamo (Head of Bioinformatics)

Sequencing libraries and platforms - Melanie Febrer (Library Construction Team Leader)

Re-sequencing Arabidopsis accessions - Sarah Ayling (Computational Genomics Team Leader)

Introduction to GridGate (a bioinformatics as a service platform) - Greg Compton (i-Abra)

Hands on experience using the ShoreMap pipeline

Expression analysis (RNA-seq) - David Swarbreck (Genome Analysis Team Leader)

The Tuxedo pipeline in GridGate - Greg Compton

The workshop talks are available at http://www.plantsci.org.uk/events/next-generation-sequencing-arabidopsis-research-workshop